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ScholarWorks@Kumoh

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:KIT

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SMU Research Data Repository
Data Repository Singapore Compatibility:Not yet registeredPartners:SMU Humanities and Social Sciences, Psychology, Social Sciences
SMU
re3data: r3d100013524
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Conservation Genome Resource Bank for Korean Wildlife
Data Repository Korea (Republic of) Compatibility:Not yet registeredPartners:SNU, KOSEF Life Sciences, Basic Biological and Medical Research, General Genetics
SNU,
KOSEF
re3data: r3d100012666
re3data: r3d100012666
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DSpace@INHA

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:INHA

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ScholarWorks@Korea University College of Medicine

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:Korea University College of Medicine

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International Ocean Discovery Program
Data Repository India, Brazil, Germany, Australia, Norway, Japan, Korea (Republic of), United States, China (People's Republic of), European Union Compatibility:Not yet registeredPartners:Ministry of Earth Science, CAPES, University of Bremen, ANZIC, IODP +15 partners Natural Sciences, Atmospheric Science and Oceanography, Oceanography
Ministry of Earth Science,
CAPES,
University of Bremen,
ANZIC,
IODP,
MEXT,
KIGAM,
India Ministry of Earth Science,
BGR,
IODP,
CAPES,
JAMSTEC,
CDEX,
Marum,
NSF,
MOST,
ECORD,
ECORD,
IODP-Koordinationsbüro an der Bundesanstalt für Geowissenschaften und Rohstoffe BGR,
KIGAM
re3data: r3d100010267
re3data: r3d100010267
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CUBE-DB
Data Repository Singapore Compatibility:Not yet registeredPartners:Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore Life Science, Multiple sequence alignment, molecular_function
Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore
doi: 10.25504/fairsharing.aqb4ne
doi: 10.25504/fairsharing.aqb4ne
Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family classification follows (largely) the classification suggested by HUGO Gene Nomenclature Committee. Sets of orthologous protein sequences were generated by mutual-best-hit strategy using full vertebrate genomes available in Ensembl. The scores, described on documentation page, are assigned to each individual residue in a protein, and presented in the form of a table (html or downloadable xls formats) and mapped, when appropriate, onto the related structure (Jmol, Pymol, Chimera).
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Ulsan College

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:Ulsan College

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KCA Open Access Repository

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:Korea Consumer AGency (한국소비자원)

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Allosteric Mutation Analysis and Polymorphism of Signaling database
Data Repository Singapore Compatibility:Not yet registeredPartners:BII Life Science, signaling, protein
BII
doi: 10.25504/fairsharing.aie9sa
doi: 10.25504/fairsharing.aie9sa
The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and allosteric effects of mutations. In addition to energetics of allosteric signaling between known functional and regulatory sites, allosteric modulation caused by the binding to these sites, by SNPs, and by mutations designated by the user can be explored. Allosteric Signaling Maps (ASMs), which are produced via the exhaustive computational scanning for stabilizing and destabilizing mutations and for the modulation range caused by the sequence position are available for each protein/protein chain in the database.
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663 Data sources

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ScholarWorks@Kumoh

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:KIT

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SMU Research Data Repository
Data Repository Singapore Compatibility:Not yet registeredPartners:SMU Humanities and Social Sciences, Psychology, Social Sciences
SMU
re3data: r3d100013524
re3data: r3d100013524
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Conservation Genome Resource Bank for Korean Wildlife
Data Repository Korea (Republic of) Compatibility:Not yet registeredPartners:SNU, KOSEF Life Sciences, Basic Biological and Medical Research, General Genetics
SNU,
KOSEF
re3data: r3d100012666
re3data: r3d100012666
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DSpace@INHA

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:INHA

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ScholarWorks@Korea University College of Medicine

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:Korea University College of Medicine

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International Ocean Discovery Program
Data Repository India, Brazil, Germany, Australia, Norway, Japan, Korea (Republic of), United States, China (People's Republic of), European Union Compatibility:Not yet registeredPartners:Ministry of Earth Science, CAPES, University of Bremen, ANZIC, IODP +15 partners Natural Sciences, Atmospheric Science and Oceanography, Oceanography
Ministry of Earth Science,
CAPES,
University of Bremen,
ANZIC,
IODP,
MEXT,
KIGAM,
India Ministry of Earth Science,
BGR,
IODP,
CAPES,
JAMSTEC,
CDEX,
Marum,
NSF,
MOST,
ECORD,
ECORD,
IODP-Koordinationsbüro an der Bundesanstalt für Geowissenschaften und Rohstoffe BGR,
KIGAM
re3data: r3d100010267
re3data: r3d100010267
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CUBE-DB
Data Repository Singapore Compatibility:Not yet registeredPartners:Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore Life Science, Multiple sequence alignment, molecular_function
Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute, Singapore
doi: 10.25504/fairsharing.aqb4ne
doi: 10.25504/fairsharing.aqb4ne
Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated conservation and specialization scores for residues in paralogous proteins belonging to multi-member families of human proteins. Protein family classification follows (largely) the classification suggested by HUGO Gene Nomenclature Committee. Sets of orthologous protein sequences were generated by mutual-best-hit strategy using full vertebrate genomes available in Ensembl. The scores, described on documentation page, are assigned to each individual residue in a protein, and presented in the form of a table (html or downloadable xls formats) and mapped, when appropriate, onto the related structure (Jmol, Pymol, Chimera).
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Ulsan College

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:Ulsan College

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KCA Open Access Repository

Institutional Repository Korea (Republic of) Compatibility:Not yet registeredPartners:Korea Consumer AGency (한국소비자원)

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Allosteric Mutation Analysis and Polymorphism of Signaling database
Data Repository Singapore Compatibility:Not yet registeredPartners:BII Life Science, signaling, protein
BII
doi: 10.25504/fairsharing.aie9sa
doi: 10.25504/fairsharing.aie9sa
The AlloMAPS database provides data on the energetics of communication in proteins with well-documented allosteric regulation, allosteric signalling in PDBselect chains, and allosteric effects of mutations. In addition to energetics of allosteric signaling between known functional and regulatory sites, allosteric modulation caused by the binding to these sites, by SNPs, and by mutations designated by the user can be explored. Allosteric Signaling Maps (ASMs), which are produced via the exhaustive computational scanning for stabilizing and destabilizing mutations and for the modulation range caused by the sequence position are available for each protein/protein chain in the database.
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SG
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ScholarWorks@Kumoh

SMU Research Data Repository

Conservation Genome Resource Bank for Korean Wildlife

DSpace@INHA

ScholarWorks@Korea University College of Medicine

International Ocean Discovery Program

CUBE-DB

Ulsan College

KCA Open Access Repository

Allosteric Mutation Analysis and Polymorphism of Signaling database

ScholarWorks@Kumoh

SMU Research Data Repository

Conservation Genome Resource Bank for Korean Wildlife

DSpace@INHA

ScholarWorks@Korea University College of Medicine

International Ocean Discovery Program

CUBE-DB

Ulsan College

KCA Open Access Repository

Allosteric Mutation Analysis and Polymorphism of Signaling database

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