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Therapeutically Relevant Multiple Pathways Database
Data Repository Singapore Compatibility:Not yet registeredPartners:Bioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore, Singapore Biomedical Science, disease, pathway
Bioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore, Singapore
doi: 10.25504/fairsharing.hm0s3e
doi: 10.25504/fairsharing.hm0s3e
The Therapeutically Relevant Multiple Pathways Database is designed to provide information about such multiple pathways and related therapeutic targets described in the literatures, the targeted disease conditions, and the corresponding drugs/ligands directed at each of these targets. This resource has been marked as Uncertain because its project home can no longer be found either with a general search or on the founding group's website at http://bidd.group/group/about.htm. Please get in touch if you have any information about this resource.
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SIT Institutional Research Repository

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The Digital repository of Information Science Department

Institutional Repository Saudi Arabia Compatibility:Not yet registeredPartners:KAU

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Institutional Knowledge at Singapore Management University

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DES-TOMATO
Data Repository Saudi Arabia Compatibility:Not yet registeredPartners:KAUST Biology, Bioinformatics, Text mining
KAUST
doi: 10.25504/fairsharing.abbexa
doi: 10.25504/fairsharing.abbexa
DES-TOMATO is a topic-specific literature exploration system developed to allow the exploration of information related to tomato. The information provided in DES-TOMATO is obtained through the text-mining of available scientific literature, namely full-length articles in PubMed Central and titles and abstracts in PubMed.
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HOmo sapiens transcription factor COmprehensive MOdel COllection
Data Repository Saudi Arabia, Russian Federation Compatibility:Not yet registeredPartners:KAUST, VIGG, Institute of Systems Biology Ltd, Russia Life Science, Transcription Factor, ChIP-seq assay
KAUST,
VIGG,
Institute of Systems Biology Ltd, Russia
doi: 10.25504/fairsharing.c1bjep
doi: 10.25504/fairsharing.c1bjep
HOmo sapiens COmprehensive MOdel COllection (HOCOMOCO) v11 provides transcription factor (TF) binding models for 680 human and 453 mouse TFs. Since v11, HOCOMOCO is complemented by MoLoTool, an interactive web tool to mark motif occurrences in a given set of DNA sequences. In addition to basic mononucleotide position weight matrices (PWMs), HOCOMOCO provides dinucleotide position weight matrices based on ChIP-Seq data. All the models were produced by the ChIPMunk motif discovery tool. Model quality ratings are results of a comprehensive cross-validation benchmark. ChIP-Seq data for motif discovery was extracted from GTRD database of BioUML platform, that also provides an interface for motif finding (sequence scanning) with HOCOMOCO models.
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Najran Universitys Repository

Institutional Repository Saudi Arabia Compatibility:Not yet registeredPartners:NU

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Digital Library of King Abdullah bin Abdulaziz Al Saud Biography Documentation Center
Thematic Repository Saudi Arabia Compatibility:Not yet registeredPartners:King Abdullah bin Abdulaziz Al Saud Biography Documentation Center
King Abdullah bin Abdulaziz Al Saud Biography Documentation Center
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DR-NTU (Data)
Institutional Repository Singapore Compatibility:OpenAIRE Data (funded, referenced datasets)Partners:NTU
NTU
re3data: r3d100012440
re3data: r3d100012440
OAI-PMH URL: https://researchdata.ntu.edu.sg/oai
DR-NTU (Data) is an institutional research data repository of Nanyang Technological University (NTU), Singapore. The repository has a mission to curate, store, preserve, make available and enable the download of digital data generated by the NTU research community in various disciplines. The repository develops and provides guidance for managing, sharing, and reusing research data to promote responsible data sharing in support of open science and research integrity.
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463 Data sources

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Therapeutically Relevant Multiple Pathways Database
Data Repository Singapore Compatibility:Not yet registeredPartners:Bioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore, Singapore Biomedical Science, disease, pathway
Bioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore, Singapore
doi: 10.25504/fairsharing.hm0s3e
doi: 10.25504/fairsharing.hm0s3e
The Therapeutically Relevant Multiple Pathways Database is designed to provide information about such multiple pathways and related therapeutic targets described in the literatures, the targeted disease conditions, and the corresponding drugs/ligands directed at each of these targets. This resource has been marked as Uncertain because its project home can no longer be found either with a general search or on the founding group's website at http://bidd.group/group/about.htm. Please get in touch if you have any information about this resource.
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SIT Institutional Research Repository

Institutional Repository Singapore Compatibility:Not yet registeredPartners:SIT

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The Digital repository of Information Science Department

Institutional Repository Saudi Arabia Compatibility:Not yet registeredPartners:KAU

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Institutional Knowledge at Singapore Management University

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DES-TOMATO
Data Repository Saudi Arabia Compatibility:Not yet registeredPartners:KAUST Biology, Bioinformatics, Text mining
KAUST
doi: 10.25504/fairsharing.abbexa
doi: 10.25504/fairsharing.abbexa
DES-TOMATO is a topic-specific literature exploration system developed to allow the exploration of information related to tomato. The information provided in DES-TOMATO is obtained through the text-mining of available scientific literature, namely full-length articles in PubMed Central and titles and abstracts in PubMed.
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HOmo sapiens transcription factor COmprehensive MOdel COllection
Data Repository Saudi Arabia, Russian Federation Compatibility:Not yet registeredPartners:KAUST, VIGG, Institute of Systems Biology Ltd, Russia Life Science, Transcription Factor, ChIP-seq assay
KAUST,
VIGG,
Institute of Systems Biology Ltd, Russia
doi: 10.25504/fairsharing.c1bjep
doi: 10.25504/fairsharing.c1bjep
HOmo sapiens COmprehensive MOdel COllection (HOCOMOCO) v11 provides transcription factor (TF) binding models for 680 human and 453 mouse TFs. Since v11, HOCOMOCO is complemented by MoLoTool, an interactive web tool to mark motif occurrences in a given set of DNA sequences. In addition to basic mononucleotide position weight matrices (PWMs), HOCOMOCO provides dinucleotide position weight matrices based on ChIP-Seq data. All the models were produced by the ChIPMunk motif discovery tool. Model quality ratings are results of a comprehensive cross-validation benchmark. ChIP-Seq data for motif discovery was extracted from GTRD database of BioUML platform, that also provides an interface for motif finding (sequence scanning) with HOCOMOCO models.
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Najran Universitys Repository

Institutional Repository Saudi Arabia Compatibility:Not yet registeredPartners:NU

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Digital Library of King Abdullah bin Abdulaziz Al Saud Biography Documentation Center
Thematic Repository Saudi Arabia Compatibility:Not yet registeredPartners:King Abdullah bin Abdulaziz Al Saud Biography Documentation Center
King Abdullah bin Abdulaziz Al Saud Biography Documentation Center
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DR-NTU (Data)
Institutional Repository Singapore Compatibility:OpenAIRE Data (funded, referenced datasets)Partners:NTU
NTU
re3data: r3d100012440
re3data: r3d100012440
OAI-PMH URL: https://researchdata.ntu.edu.sg/oai
DR-NTU (Data) is an institutional research data repository of Nanyang Technological University (NTU), Singapore. The repository has a mission to curate, store, preserve, make available and enable the download of digital data generated by the NTU research community in various disciplines. The repository develops and provides guidance for managing, sharing, and reusing research data to promote responsible data sharing in support of open science and research integrity.
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Therapeutically Relevant Multiple Pathways Database

SIT Institutional Research Repository

The Digital repository of Information Science Department

Institutional Knowledge at Singapore Management University

NIE Digital Repository

DES-TOMATO

HOmo sapiens transcription factor COmprehensive MOdel COllection

Najran Universitys Repository

Digital Library of King Abdullah bin Abdulaziz Al Saud Biography Documentation Center

DR-NTU (Data)

Therapeutically Relevant Multiple Pathways Database

SIT Institutional Research Repository

The Digital repository of Information Science Department

Institutional Knowledge at Singapore Management University

NIE Digital Repository

DES-TOMATO

HOmo sapiens transcription factor COmprehensive MOdel COllection

Najran Universitys Repository

Digital Library of King Abdullah bin Abdulaziz Al Saud Biography Documentation Center

DR-NTU (Data)

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